PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g15980.1
Common NameLR48_Vigan03g288600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CO-like
Protein Properties Length: 336aa    MW: 37170.6 Da    PI: 5.4287
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g15980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.23e-07952340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  Vang04g15980.1  9 ARPCDYCGHSMAVLYCRADSAKLCFSCDREVHSTnqlfskHTRT 52
                    678******99*********************668888888876 PP

2zf-B_box25.92.1e-085497542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                     C+ +++ ++++ C ++ + +C++C  e+H +       H+++pl
  Vang04g15980.1 54 LCDACDDSPATILCSTDTSVFCQNCDWEKH-NpslsdslHQRRPL 97
                    7*****************************.54899999988775 PP

3CCT39.91.5e-143043311643
             CCT  16 kFeKkirYesRKavAesRpRvKGrFvkq 43 
                     +++K+irYesRK++AesR RvKGrF+k 
  Vang04g15980.1 304 RYDKHIRYESRKVRAESRVRVKGRFAKM 331
                     69************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.594754IPR000315B-box-type zinc finger
SMARTSM003361.7E-14754IPR000315B-box-type zinc finger
PfamPF006432.4E-6852IPR000315B-box-type zinc finger
CDDcd000214.23E-71054No hitNo description
PROSITE profilePS501199.7415097IPR000315B-box-type zinc finger
PfamPF006433.4E-65496IPR000315B-box-type zinc finger
CDDcd000218.18E-55497No hitNo description
SMARTSM003360.275597IPR000315B-box-type zinc finger
PROSITE profilePS510179.703289331IPR010402CCT domain
PfamPF062033.6E-10304331IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTAEAPKPAR PCDYCGHSMA VLYCRADSAK LCFSCDREVH STNQLFSKHT RTLLCDACDD  60
SPATILCSTD TSVFCQNCDW EKHNPSLSDS LHQRRPLEGF TGCPSVSELL SVVGFGDLSK  120
KSLLSSPQGS AADGFLGCEI EGFSDLFVWD APSVVTLDDL ISSSASSHSF QAMEVPPLPK  180
NRKAACGRHR EEILSQLREL ARSEPLDLEQ YVQPENLSSA FESDVEWHRE MSEPMYQVVP  240
PDPSLRTYTE EVPVKQSTSV GETHTFGDKG GNPSISLNSE TLPTTPKAGA CELTSQERDS  300
ALLRYDKHIR YESRKVRAES RVRVKGRFAK MEREH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496135.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
RefseqXP_014496134.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
RefseqXP_014496133.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
RefseqXP_014496132.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
RefseqXP_014496131.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
RefseqXP_014496130.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A0L9UAG00.0A0A0L9UAG0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S0I70.0A0A0S3S0I7_PHAAN; Uncharacterized protein
STRINGGLYMA03G36810.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-81B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]